PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00696.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LSD
Protein Properties Length: 198aa    MW: 21214.9 Da    PI: 8.163
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00696.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.62e-132852125
                  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                             C+gCr+lL YP GA+sV+Ca+C++V
  Sme2.5_00696.1_g00012.1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52
                             ************************9 PP

2zf-LSD146.27.7e-156791125
                  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                             CggC+tlL+Y rGA+sV+C++C+tV
  Sme2.5_00696.1_g00012.1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                             ************************9 PP

3zf-LSD141.22.7e-13105129125
                  zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                              Cg+Cr lL+Y +GA+sV+Ca+C++V
  Sme2.5_00696.1_g00012.1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                              ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.106.0E-423126No hitNo description
TIGRFAMsTIGR010531.6E-122555IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-102852IPR005735Zinc finger, LSD1-type
SuperFamilySSF486958.79E-528126IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.4E-146493IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.5E-12102132IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-12105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MPVPLAPYPT PPTPFAPPAN GTQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAMEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT SVGDKARTAE QFIPPLKKLA NKDQLDEKDA LDFPAHDKIT RKTLICPSYG  180
PFTWVIWISL APKATPLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0107878e-52AP010787.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0012J05, complete sequence.
GenBankHG9755208e-52HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590866.11e-91PREDICTED: protein LOL1 isoform X2
RefseqXP_016446756.11e-91PREDICTED: protein LOL1 isoform X2
SwissprotQ93ZB11e-78LOL1_ARATH; Protein LOL1
TrEMBLA0A103XQX81e-88A0A103XQX8_CYNCS; Zinc finger, LSD1-type
STRINGVIT_02s0012g00990.t012e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-63lsd one like 1